1UCS - JenaLib

Title :   TYPE III ANTIFREEZE PROTEIN RD1 FROM AN ANTARCTIC EEL POUT

Authors :   T. -P. Ko, H. Robinson, Y. -G. Gao, C. -H. C. Cheng, A. L. Devries, A. H. - J. Wang

Date :   21 Apr 03 (Deposition) - 06 May 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   0.62

Chains :   Asym./Biol. Unit : A

Keywords :   Small Beta Barrel, Pretzel Fold, Antifreeze Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. -P. Ko, H. Robinson, Y. -G. Gao, C. -H. C. Cheng, A. L. Devries, A. H. -J. Wang
The Refined Crystal Structure Of An Eel Pout Type Iii Antifreeze Protein Rd1 At 0. 62-(Angstrom) Resolution Reveals Structural Microheterogeneity Of Protein And Solvation
Biophys. J. V. 84 1228 2003
PubMed-ID: 12547803
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:64
 aligned with ANP1_LYCDA | P35751 from UniProtKB/Swiss-Prot  Length:64

    Alignment length:64
                                    10        20        30        40        50        60    
            ANP1_LYCDA    1 NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVPLGTTLMPDMVKNYE 64
               SCOP domains d1ucsa_ A: Type III antifreeze protein, AFP III                  SCOP domains
               CATH domains 1ucsA00 A:1-64 Type Iii Antifreeze Protein Isoform Hplc 12       CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..........hhh.eeee.......hhhhhhhhh..............hhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---AFP_LIKE  PDB: A:4-63 UniProt: 4-63                         - PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  1ucs A  1 NKASVVANQLIPINTALTLIMMKAEVVTPMGIPAEEIPKLVGMQVNRAVPLGTTLMPDMVKNYE 64
                                    10        20        30        40        50        60

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Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

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Gene Ontology (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ANP1_LYCDA | P35751)

biological process
	GO:0050826	response to freezing	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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		Thr A:28 - Pro A:29	[ RasMol ]

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