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(-) Description

Title :  CO-CRYSTAL STRUCTURE OF NRPS ADENYLATION PROTEIN CYTC1 WITH AMINOBUTYRIC ACID AND AMP FROM STREPTOMYCES
 
Authors :  H. Okumura, M. Ueki, Y. Shiro, H. Osada
Date :  17 Jan 12  (Deposition) - 23 Jan 13  (Release) - 23 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A
Keywords :  Acetyl-Coa Synthetase-Like, Adenylation, Atp Binding, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ueki, H. Okumura, H. Osada
Substrate Recognition Mechanism Of Nrps Adenylation Protein From Streptomyces
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - NRPS ADENYLATION PROTEIN CYTC1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: STREPTOMYCES SP.
    Organism Taxid: 1931
    Strain: RK95-74

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ABA1Ligand/IonALPHA-AMINOBUTYRIC ACID
2AMP1Ligand/IonADENOSINE MONOPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:281 , GLU A:282 , LYS A:283 , ASN A:305 , GLY A:306 , TYR A:307 , GLY A:308 , THR A:310 , ASP A:401 , TYR A:413 , ARG A:416 , LYS A:507 , ABA A:602 , HOH A:719 , HOH A:732 , HOH A:738 , HOH A:965 , HOH A:970BINDING SITE FOR RESIDUE AMP A 601
2AC2SOFTWAREASP A:208 , PHE A:209 , GLY A:280 , GLY A:281 , GLY A:306 , GLY A:308 , ILE A:309 , VAL A:314 , PHE A:315 , AMP A:601BINDING SITE FOR RESIDUE ABA A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3VNR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Arg A:300 -Pro A:301

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3VNR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3VNR)

(-) Exons   (0, 0)

(no "Exon" information available for 3VNR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:493
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d3vnra_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh.hhhhhhhhhhhhh...eeeee..eeeehhhhhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhh..eeee..........eehhhhhhhh............eeeeeee..eeeeeehhhhhhhhhhhhhh.......eeee......hhhhhhhhhhhhh..eeee.hhhhh.hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhh.......eeee.....hhhhhhhhhhhhh....eeeeee.hhhhh...eeee.hhhhhh....eeeee....eeeee...........eeeeeee..........hhhhhhhhh......eeeeeeeeee.....eeeeee...eeee..eeeehhhhhhhhhh...eeeeeeeeeeee..eeeeeeeeee......hhhhhhhhhhh..hhhhh..eeee............hhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3vnr A   7 TSDPIARNSDLVSLFREVAATAPERTALSAEDDRISYGRLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEAIVAILAILKCGAAYVPVDLRNPVSRSDFILADSGASALIGEPHEGCAVTRVVRTAAVAECKDAEPPGPGAEDMAYVIYTSPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYGITETTVFTTFEEITEAYLAQDASIIGRALPSFGTRVVGDDGRDVAPGETGELWLSGAQLAEGYLRRPELTAEKFPEVSVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVVDAVVTVREFKPGDLRLVCAYVAREGSATTARELRNHIKTLLPAYMHPARYLPLPGLPRTVNGKVDRAAVARSW 517
                                    16        26        36        46        56        66        76        86        96       106       116       126       136      |152       162 ||    177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       394       404       414       424       434       444       454       464       474       484       494       504       514   
                                                                                                                                                                  143|           164|                                                                                                                                                                                                                    385|                                                                                                                            
                                                                                                                                                                   150            170                                                                                                                                                                                                                     393
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Multi-domain proteins (alpha and beta) (2421)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3VNR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3VNR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3VNR)

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 Related Entries

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(-) Related Entries Specified in the PDB File

1amu 3dhv 3e7w 3e7x 3fcc 3fce 3vnq 3vns