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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ALPHA SUBUNIT OF HEME DEPENDENT OXIDATIVE N-DEMETHYLASE (HODM)
 
Authors :  M. Ortmayer, D. Leys
Date :  06 Sep 16  (Deposition) - 09 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Heme Binding, Pas Domain, Amine Oxidase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Ortmayer, P. Lafite, B. R. Menon, T. Tralau, K. Fisher, L. Denkhaus, N. S. Scrutton, S. E. Rigby, A. W. Munro, S. Hay, D. Leys
An Oxidative N-Demethylase Reveals Pas Transition From Ubiquitous Sensor To Enzyme.
Nature V. 539 593 2016
PubMed-ID: 27851736  |  Reference-DOI: 10.1038/NATURE20159

(-) Compounds

Molecule 1 - HEME DEPENDENT OXIDATIVE N-DEMETHYLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PMEN_3455
    Organism Scientific: PSEUDOMONAS MENDOCINA (STRAIN YMP)
    Organism Taxid: 399739
    Strain: YMP

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric/Biological Unit (3, 3)
No.NameCountTypeFull Name
1ETX1Ligand/Ion2-ETHOXYETHANOL
2HEM1Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
3NA1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:38 , SER A:39 , LEU A:160 , TRP A:180 , TRP A:193 , HIS A:194 , VAL A:197 , PHE A:206 , ARG A:224 , ASN A:226 , TRP A:227 , PHE A:281 , TYR A:317 , LYS A:318 , HOH A:620 , HOH A:638 , HOH A:730 , HOH A:785 , HOH A:790 , HOH A:808binding site for residue HEM A 501
2AC2SOFTWAREMET A:37 , SER A:39 , NA A:503binding site for residue ETX A 502
3AC3SOFTWAREETX A:502 , HOH A:711binding site for residue NA A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LTE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5LTE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LTE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LTE)

(-) Exons   (0, 0)

(no "Exon" information available for 5LTE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:333
                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............hhhhhhhh...............ee..................hhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhhhhhhhh...eeeeee..eeeeee....eeeeee..hhhhh..hhhhhhhh....eeeeeeee..eeeeeeee.......hhhhhh..hhhhhh.........hhhhhhhhhhhh......eeeeeeeeee......hhhhhhhhhhhhhh....hhhhheeeeeeeeeeee......eeeeeeeeeeehhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lte A   5 FKPLESYREDFSFRNSPAAIARFPFPFPEDQYMYSVNLEPAVSRDPGSVFEHQFDVDEHYVSEMAERARVLELDPGRCLVMPHMAQAAWDTLAMLMEHLARDYPQHFRLTRQGDAWHWQNLALGIDQRFTFGDPASLPCEPLEYITRQMQGDFAVLDQRDGDLFMDAGMVTCPADWSLRFDAGMSFKQWHSPVPMAHQMGVFDRALKYLLNIQVGAPVRRLNWTLTINPRLDTSPETYHEWGNDRGKVTPDNVGRLVHLRVELQLMARLPRSNALLFGIRTYLISLDELVSNPAWAQRLHRVMRDLPDPIADYKGITRYRQTLVDWLRRFDPE 337
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LTE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LTE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LTE)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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UniProtKB/TrEMBL
        A4XXY9_PSEMY | A4XXY9: 5lth 5lti

(-) Related Entries Specified in the PDB File

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