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(-) Description

Title :  ROOM TEMPERATURE ULTRA-HIGH RESOLUTION TIME-OF-FLIGHT NEUTRON AND X-RAY DIFFRACTION STUDIES OF H/D EXCHANGED CRAMBIN
 
Authors :  J. C. -H. Chen
Date :  14 Oct 11  (Deposition) - 08 Feb 12  (Release) - 15 Feb 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  0.85
Chains :  Asym./Biol. Unit :  A
Keywords :  Thionin Family, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. C. Chen, Z. Fisher, A. Y. Kovalevsky, M. Mustyakimov, B. L. Hanson, V. V. Zhurov, P. Langan
Room-Temperature Ultrahigh-Resolution Time-Of-Flight Neutro And X-Ray Diffraction Studies Of H/D-Exchanged Crambin.
Acta Crystallogr. , Sect. F V. 68 119 2012
PubMed-ID: 22297981  |  Reference-DOI: 10.1107/S1744309111051499

(-) Compounds

Molecule 1 - CRAMBIN
    ChainsA
    Organism CommonABYSSINIAN CRAMBE,ABYSSINIAN KALE
    Organism ScientificCRAMBE HISPANICA SUBSP. ABYSSINICA
    Organism Taxid3721

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3U7T)

(-) Sites  (0, 0)

(no "Site" information available for 3U7T)

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:3 -A:40
2A:4 -A:32
3A:16 -A:26

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3U7T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 2)

Asymmetric/Biological Unit (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_CRAM_CRAAB_001 *P22SCRAM_CRAAB  ---  ---AP22S
2UniProtVAR_CRAM_CRAAB_002 *L25ICRAM_CRAAB  ---  ---AL25I
   * ID not provided by source

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIONINPS00271 Plant thionins signature.CRAM_CRAAB3-16  1A:3-16

(-) Exons   (0, 0)

(no "Exon" information available for 3U7T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:48
 aligned with CRAM_CRAAB | P01542 from UniProtKB/Swiss-Prot  Length:46

    Alignment length:48
                                                     25                     
                                                   24 |                     
                                                 22 | |                     
                                               21 | | |                     
                                    10        20| | | | 28        38        
            CRAM_CRAAB    1 TTCCPSIVARSNFNVCRLPGT-PEA-LCATYTGCIIIPGATCPGDYAN 46
               SCOP domains d3u7ta_ A: Crambin                               SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author .ee..hhhhhhhhhhhhh...hhhhhhhhhhhh.ee............ Sec.struct. author
                 SAPs(SNPs) ---------------------SS--II--------------------- SAPs(SNPs)
                    PROSITE --THIONIN       -------------------------------- PROSITE
                 Transcript ------------------------------------------------ Transcript
                  3u7t A  1 TTCCPSIVARSNFNVCRLPGTSPEAILCATYTGCIIIPGATCPGDYAN 46
                                    10        20        28        38        

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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3U7T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3U7T)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CRAM_CRAAB | P01542)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRAM_CRAAB | P015421ab1 1cbn 1ccm 1ccn 1cnr 1crn 1cxr 1ejg 1jxt 1jxu 1jxw 1jxx 1jxy 1yv8 1yva 2eya 2eyb 2eyc 2eyd 2fd7 2fd9 3nir 3ue7 4fc1

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3U7T)